Will not go into ready mode 2011 Juke push to start, manual trans

Question

Vehicle will not go into ready mode, not sure where my settings were when it did, the vehicle would shut down when drivers door closed, after this I received instructions for the clutch bypass so i connected the yellow wire from the main harness to the brown at the clutch switch and it seems that since then can't get it to go into ready mode. Vehicle will not shut down when drivers door closed, detects fob left vehicle. It's likely a settings thing but not sure. s/n 002B04 227820